design_data
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design_data [2015/12/18 16:44] mhidalgo |
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| ===== Design data panel ===== | ===== Design data panel ===== | ||
| - | The design data panel allows you to choose the kind of experiment you want to perform. You can choose between three main experimental designs: | + | The design data panel allows you to choose the kind of experiment you want to perform. You can choose between three kinds of experimental design: |
| * **Two group comparison**: The comparison is performed between the two groups described in the experimental design file. The experimental design file must include two columns: the first one with the names of the samples, the second one with the class to which each sample belongs. | * **Two group comparison**: The comparison is performed between the two groups described in the experimental design file. The experimental design file must include two columns: the first one with the names of the samples, the second one with the class to which each sample belongs. | ||
| * **Correlation with continuous variable**: A correlation is performed between the values of each path along the samples and the continuous variable introduced. The experimental design file must include two columns: the first one with the names of the samples, the second one with the value of the variable for each one of the samples. | * **Correlation with continuous variable**: A correlation is performed between the values of each path along the samples and the continuous variable introduced. The experimental design file must include two columns: the first one with the names of the samples, the second one with the value of the variable for each one of the samples. | ||
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| - | * **Mutation effect**: The comparison is performed between the expression matrix without considering the mutations, and the expression matrix resulting from integrating the information about the mutations. No experimental design file is needed. | ||
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design_data.1450457067.txt.gz · Last modified: 2020/04/03 20:18 (external edit)
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