expression_matrix_file_format
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expression_matrix_file_format [2016/04/26 13:05] fsalavert |
expression_matrix_file_format [2020/04/03 20:18] (current) |
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| The first column corresponds to genes, probes or proteins, and the following IDs are accepted: | The first column corresponds to genes, probes or proteins, and the following IDs are accepted: | ||
| - | - Ensembl gene | + | * Ensembl gene |
| - | - HGNC symbol | + | * HGNC symbol |
| - | - Entrez id | + | * Entrez id |
| - | - Affy HG U133A probeset | + | * Affy HG U133A probeset |
| - | - Affy HG U133B probeset | + | * Affy HG U133B probeset |
| - | - Affy HG U133-PLUS-2 probeset | + | * Affy HG U133-PLUS-2 probeset |
| - | - Affy HTA 2.0 | + | * Affy HTA 2.0 |
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| </code> | </code> | ||
| + | For a file example see {{:brca_genes_vals_bn.txt|}} | ||
| + | **Note**: If probe expression values are provided, these are recodified to gene expression values, obtained as the average value of all the probes mapping in the gene. | ||
| - | You can download an usable example file from {{:brca_example1_40_exp.txt|here}} | + | **The web version of Hipathia is limited to a maximum of 500 samples per dataset. For bigger datasets please use [[http://bioconductor.org/packages/release/bioc/html/hipathia.html|the R Bioconductor Hipathia package]]** |
| - | + | ||
| - | **Note**: If probe expression values are provided, these are recodified to gene expression values, obtained as the average value of all the probes mapping in the gene. | + | |
expression_matrix_file_format.1461675944.txt.gz · Last modified: 2020/04/03 20:18 (external edit)
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