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--- worked_example_prediction [2015/12/22 12:22]
mhidalgo
+++ worked_example_prediction [2020/04/03 20:18] (current)
@@ Line 1: / Line 1: @@
 ====== Worked example Prediction - Test ======
-  - Log in into HiPathia. For further information on this step visit [[logging_in|Logging in]].
+**1.** Log in into HiPathia. For further information on this step visit [[logging_in|Logging in]].
-  - We will test the model with another Breast Cancer dataset from the repository The Cancer Genome Atlas. You can download the expression matrix of the test data from the link:
-    * Test expression matrix:
+**2.** We will test the model with another Breast Cancer dataset from the repository The Cancer Genome Atlas. You can download the expression matrix of the test data from the link:
-  - Upload the data to HiPathia in the data panel by clicking on //My data//. For further information on this step visit [[upload_your_data|Upload your data]].
+  * Test expression matrix: {{:brca_genes_vals_bn_test.txt|}}
-  - Press the //Prediction// button.
+**3.** Upload the data to HiPathia in the data panel by clicking on //My data//. For further information on this step visit [[upload_your_data|Upload your data]].
+**4.** Press the //Prediction// button.
 {{ :hipathia_bar_pred.png?600 |}}
-  - In the //Type// panel, select //Test existing model//. A window with all the existing models will appear. Select the model you want to use. We will use the model we have created in [[worked_example_prediction_-_train|Worked example Prediction - Train]]. The model information will appear on the right panel.
+**5.** In the //Type// panel, select //Test existing predictor//. A window with all the existing models will appear. Select the model you want to use. We will use the model we have created in [[worked_example_prediction_-_train|Worked example Prediction - Train]]. The model information will appear on the right panel.
 {{ :hipathia_work5.png?600 |}}
-  - In the //Input data panel// select //Expression matrix//. Press the //File browser// of the //Expression matrix file//, and select the desired file, //brca_genes_vals_bn_test.txt//.
+**6.** In the //Input data panel// select //Expression matrix//. Press the //File browser// of the //Expression matrix file//, and select the desired file, //brca_genes_vals_bn_test.txt//.
 {{ :hipathia_work6.png?600 |}}
-  - In the //Job information// panel, press the //File browser// button and select the desired output folder. In this case we will use //analysis//. Give a name to the job, for example "BRCA test model".
+**7.** In the //Job information// panel, press the //File browser// button and select the desired output folder. In this case we will use //analysis_BRCA//. Give a name to the job, for example "BRCA test model".
 {{ :hipathia_work7.png?600 |}}
-  - Press the //Launch job// button. A job will be created and listed in the jobs panel. You can access this panel by clicking on the //My jobs// button.
+**8.** Press the //Run analysis// button. A job will be created and listed in the jobs panel. You can access this panel by clicking on the //My jobs// button.

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