worked_example_prediction_-_train
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worked_example_prediction_-_train [2018/02/13 10:58] krian |
worked_example_prediction_-_train [2020/04/03 20:18] (current) |
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| {{ :hipathia_bar_pred.png?600 |}} | {{ :hipathia_bar_pred.png?600 |}} | ||
| - | **5.** In the //Type// panel select //Train new model//. | + | **5.** In the //Type// panel select //Train new predictor//. |
| **6.** In the //Input data panel// select //Expression matrix//. Press the //File browser// of the //Expression matrix file//, and select the desired file. | **6.** In the //Input data panel// select //Expression matrix//. Press the //File browser// of the //Expression matrix file//, and select the desired file. | ||
| - | {{ :hipathia_work1.png?600 |}} | + | {{ :hipathia_Pred_work1.png?600 |}} |
| - | **7.** In the //Design data// panel select //Two group comparison//. Press the //File browser// of the //Experimental design file//, and select the desired file. Automatically //Condition 1// and //Condition 2// files are selected. Change //Condition 1// to "Tumor" and //Condition 2// to "Normal". | + | **7.** In the //Design data// panel select //Class predictor//. Press the //File browser// of the //Experimental design file//, and select the desired file. Automatically //Condition 1// and //Condition 2// files are selected. Change //Condition 1// to "Tumor" and //Condition 2// to "Normal". |
| - | {{ :hipathia_work2.png?600 |}} | + | {{ :hipathia_Pred_work2.png?600 |}} |
| **8.** Select Human as species (by default). | **8.** Select Human as species (by default). | ||
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| **9.** In the //Pathways// panel select all the pathways (by default). | **9.** In the //Pathways// panel select all the pathways (by default). | ||
| - | **10.** In the //Job information// panel, press the //File browser// button and select the desired output folder. In this case we will use //analysis//. Give a name to the job, for example "BRCA train model". | + | **10.** In the //Job information// panel, press the //File browser// button and select the desired output folder. In this case we will use //analysis_BRCA//. Give a name to the job, for example "BRCA train model". |
| {{ :hipathia_work4.png?600 |}} | {{ :hipathia_work4.png?600 |}} | ||
| - | **11.** Press the //Launch job// button. A job will be created and listed in the jobs panel. You can access this panel by clicking on the //My jobs// button. | + | **11.** Press the //Run analysis// button. A job will be created and listed in the jobs panel. You can access this panel by clicking on the //My jobs// button. |
worked_example_prediction_-_train.1518519492.txt.gz ยท Last modified: 2020/04/03 20:18 (external edit)
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