Differences

This shows you the differences between two versions of the page.

--- data_format [2021/01/20 18:09] – [Expression matrix file format] krian
+++ data_format [2024/02/27 13:17] (current) – [Experimental design file format] krian
@@ Line 2: / Line 2: @@
 Different types of data are used in Hipathia. Some of this data require a certain structure explained on the following links:
+**Note:** The recommended file extensions are '.txt' or '.tsv'.
 ===== Expression matrix file format =====
@@ Line 9: / Line 11: @@
 A tab-separated values (TSV) file is a simple text format for storing data in a tabular structure (e.g. database or spreadsheet data). Each record in the table is one line of the text file. Each field value of a record is separated from the next by a tab stop character. [[https://en.wikipedia.org/wiki/Tab-separated_values|More about TSV...]]
-**Note:** the recommended file extensions are '.txt' or '.tsv'.
 This file has two columns if there is only one sample, and more than two columns if there are many samples.
@@ Line 52: / Line 53: @@
 Experimental design is Tab-separated values file. This file has two columns, the first one corresponds to the sample name and the second one corresponds to the phenotype.
+<code>
+sample1	Group_1
+sample2	Group_1
+sample3	Group_2
+</code>
 **Note**: In case of **paired data** the Experimental design file must be **ordered**.