Differences

This shows you the differences between two versions of the page.

--- experimental_design_file_format [2018/12/26 16:06] – krian
+++ experimental_design_file_format [2024/02/27 13:33] (current) – krian
@@ Line 3: / Line 3: @@
 Experimental design is Tab-separated values file. This file has two columns, the first one corresponds to the sample name and the second one corresponds to the phenotype.
+<code>
+sample1	Group_1
+sample2	Group_1
+sample3	Group_2
+</code>
+**Note**: In case of **paired data** the Experimental design file must be **ordered**.
+Here is an example of a file with 4 piared samples (sample1_Normal and sample1_Treated are the same sample before and after treatment):
-**Note**: In case of paired data the Experimental design file must be ordered
 <code>
-sample1_Normal	0.31
+sample1_Normal	Group_1
-sample2_Normal	1
+sample2_Normal	Group_1
-sample1_Treated	0.7
+sample1_Treated	Group_2
-sample2_Treated	0.23
+sample2_Treated	Group_2
 </code>
+Here is an other file example see {{:brca_normal-basal_ed.txt|}}.