worked_example_differential_example
Media Manager
Media Files
Files in [root]
- 14107-210448-2-pb.pdf
- 2018/03/09 12:54
- 3.6 MB
- add_genes_1.png
- 177×309
- 2021/01/15 14:20
- 13.9 KB
- addgenesexample.png
- 274×115
- 2021/01/08 13:32
- 3.9 KB
- brca_designmatrix_erposneg.txt
- 2020/11/30 18:20
- 13.2 KB
- brca_genes_vals_bn_test.txt
- 2017/05/24 13:54
- 6.5 MB
- brca_genes_vals_bn.txt
- 2017/05/24 13:54
- 6.5 MB
- brca_genes_vals_ln.txt
- 2017/05/24 13:54
- 6.5 MB
- brca_luminal-normal_ed.txt
- 2017/05/24 13:54
- 710 B
- brca_normal-basal_ed.txt
- 2017/05/24 13:54
- 710 B
- center.png
- 18×23
- 2020/02/05 11:00
- 435 B
- changebackground.mp4
- 2021/01/07 19:23
- 83.3 MB
- checkedsearchforcustomtissue.png
- 1003×563
- 2020/02/05 17:15
- 43.6 KB
- circuit.png
- 1229×614
- 2020/01/31 13:28
- 131.3 KB
- circuitsig_6.png
- 1323×431
- 2020/11/30 20:14
- 54.9 KB
- circuitsig.png
- 1349×456
- 2020/02/05 11:43
- 56.6 KB
- circuitvalue.png
- 1033×84
- 2020/02/05 11:36
- 5.2 KB
- circuitvaluespredreport.png
- 576×100
- 2020/02/05 15:52
- 5.1 KB
- clusterstatusopened.png
- 368×244
- 2019/07/31 08:28
- 15.7 KB
- clusterstatuts.png
- 99×105
- 2019/07/31 08:26
- 726 B
- compairingtissue.mp4
- 2020/02/06 14:19
- 3.2 MB
- compairingtissueprec.mp4
- 2020/02/06 14:21
- 18.9 MB
- customnumsamples.png
- 392×153
- 2020/02/20 16:43
- 18.5 KB
- demoalgo.gif
- 640×480
- 2020/02/06 15:55
- 130 KB
- demoalgo.mp4
- 2020/02/03 13:32
- 24.1 KB
- designdatacomp.png
- 996×398
- 2021/01/27 11:26
- 19.5 KB
- designdatacorr.png
- 1000×190
- 2020/01/28 20:33
- 13.4 KB
- differential_signaling_form.png
- 1680×918
- 2020/01/27 21:12
- 82.4 KB
- differential_signaling_input.png
- 1000×187
- 2020/01/27 21:17
- 14.4 KB
- diffnumbersamples.png
- 999×203
- 2020/02/20 16:32
- 22.2 KB
- downloadreport.png
- 606×114
- 2020/01/28 21:05
- 16.9 KB
- edge_colors.png
- 1444×858
- 2021/01/11 13:58
- 281.2 KB
- effectorcircuithl_6.png
- 1595×770
- 2020/11/30 19:51
- 157 KB
- effectorcircuithl.png
- 1607×834
- 2021/01/28 21:18
- 163 KB
- errorexample.png
- 587×43
- 2020/02/05 15:37
- 5.8 KB
- estrogen_signaling_pathway_hsa04915_.jpg
- 1243×574
- 2021/01/28 20:59
- 175 KB
- examplespecies.png
- 999×126
- 2021/01/07 19:36
- 8.4 KB
- expmatrfile.png
- 1000×151
- 2020/02/05 16:49
- 10.6 KB
- export_files.png
- 215×133
- 2021/01/07 18:46
- 7.5 KB
- export.png
- 28×24
- 2020/02/05 11:00
- 503 B
- fa.png
- 1023×411
- 2021/01/27 18:25
- 55.1 KB
- favicon.ico
- 141×137
- 2021/01/27 18:42
- 78.2 KB
- filevalidationlog.png
- 710×700
- 2021/01/07 12:10
- 67.8 KB
- filevalidatorlog.mp4
- 2021/01/07 13:39
- 37.1 MB
- filtercircuits.png
- 996×79
- 2021/01/07 17:01
- 4.7 KB
- finishedexampleperturbationeffect.png
- 541×96
- 2021/01/08 13:12
- 13.3 KB
- focal_adhesion_hsa04510_.jpg
- 1243×574
- 2021/01/28 21:02
- 407.4 KB
- formeexampleperturbationeffect.png
- 1675×905
- 2021/01/08 13:09
- 69.9 KB
- functionaanalysis.png
- 996×102
- 2020/01/28 20:45
- 5.5 KB
- geneupdate.png
- 266×149
- 2019/08/08 12:43
- 9.2 KB
- gse36807-crohn_ed.txt
- 2017/05/24 13:54
- 327 B
- gse36807-crohn_genes_vals.txt
- 2017/05/24 13:54
- 795.7 KB
- gse51835-exercise_ed.txt
- 2017/05/24 13:54
- 420 B
- gse51835-exercise_genes_vals.txt
- 2017/05/24 13:54
- 905.8 KB
- gtex_tissues.png
- 1067×702
- 2019/08/08 17:45
- 49 KB
- heatmap.png
- 699×658
- 2020/02/05 11:41
- 202.4 KB
- height.png
- 19×25
- 2020/02/05 11:01
- 369 B
- hipathia_bar_diffsig_5.png
- 1165×51
- 2019/07/19 12:19
- 13.2 KB
- hipathia_bar_diffsig_6.png
- 1103×51
- 2020/11/30 18:42
- 11.6 KB
- hipathia_bar_diffsig.png
- 874×50
- 2018/12/26 16:22
- 14.1 KB
- hipathia_bar_pred.png
- 1672×54
- 2019/12/19 20:29
- 17.2 KB
- hipathia_home1_5.png
- 1683×916
- 2019/07/19 11:20
- 122.2 KB
- hipathia_home1_6.png
- 1680×923
- 2019/12/19 20:16
- 124 KB
- hipathia_home1.png
- 1537×923
- 2018/12/26 12:58
- 142.9 KB
- hipathia_login.png
- 1689×810
- 2017/05/24 13:54
- 144.5 KB
- hipathia_login1_5.png
- 1683×916
- 2019/07/19 11:15
- 122.8 KB
- hipathia_login1_6.png
- 1680×923
- 2019/12/19 19:47
- 122.5 KB
- hipathia_login1.png
- 1663×749
- 2018/12/26 12:30
- 124.5 KB
- hipathia_main.png
- 1688×1021
- 2017/05/24 13:54
- 194.8 KB
- hipathia_pred_work1.png
- 1244×702
- 2019/12/19 20:31
- 93.9 KB
- hipathia_pred_work2.png
- 1249×753
- 2018/12/26 20:56
- 96.7 KB
- hipathia_upload1_5.png
- 1680×926
- 2020/02/07 16:34
- 135.7 KB
- hipathia_upload1.png
- 1537×923
- 2018/12/26 13:52
- 138.9 KB
- hipathia_upload2_5_1.png
- 705×634
- 2019/07/31 14:32
- 52.5 KB
- hipathia_upload2_5.png
- 724×702
- 2019/07/19 12:02
- 72.5 KB
- hipathia_upload2.png
- 1678×931
- 2018/12/26 15:53
- 129.1 KB
- hipathia_viewer.png
- 1563×630
- 2018/12/26 20:33
- 289.4 KB
- hipathia_w1.png
- 1684×1022
- 2017/05/24 13:54
- 216.2 KB
- hipathia_w2.png
- 1678×1027
- 2017/05/24 13:54
- 236.1 KB
- hipathia_work1_6.png
- 1388×790
- 2020/11/30 18:42
- 93.2 KB
- hipathia_work1_all.png
- 511×910
- 2020/11/30 19:09
- 43.7 KB
- hipathia_work1_study-browser.png
- 1679×498
- 2020/11/30 19:15
- 139.4 KB
- hipathia_work1-2_6.png
- 998×204
- 2020/11/30 19:03
- 15.6 KB
- hipathia_work1.png
- 1225×689
- 2019/07/19 12:25
- 65.6 KB
- hipathia_work2_6.png
- 1085×730
- 2020/11/30 18:48
- 83 KB
- hipathia_work2-2_6.png
- 1000×404
- 2020/11/30 18:56
- 23.2 KB
- hipathia_work2.png
- 1212×671
- 2019/07/19 12:26
- 67.3 KB
- hipathia_work3_5.png
- 1666×919
- 2019/07/19 12:31
- 119.7 KB
- hipathia_work3_6.png
- 1107×675
- 2020/11/30 19:06
- 77.5 KB
- hipathia_work3-2_6.png
- 1004×274
- 2020/11/30 19:08
- 14.5 KB
- hipathia_work3.png
- 1255×918
- 2018/12/26 19:08
- 118.5 KB
- hipathia_work4.png
- 1246×868
- 2019/12/19 20:32
- 110.9 KB
- hipathia_work5.png
- 1249×513
- 2019/12/19 20:33
- 55.4 KB
- hipathia_work6.png
- 1251×685
- 2019/12/19 20:33
- 162.8 KB
- hipathia_work7.png
- 1235×868
- 2019/12/19 20:34
- 137.9 KB
- hipathiatools.png
- 1677×407
- 2020/01/21 16:34
- 79.5 KB
- home.png
- 1649×925
- 2019/11/16 19:04
- 105.8 KB
- home1.png
- 1537×923
- 2018/12/23 20:29
- 126 KB
- how_to_use_hipathia_logging_in.mp4
- 2020/01/27 20:38
- 2.2 MB
- hyperparameterpredreport.png
- 677×541
- 2020/02/05 16:22
- 43.6 KB
- icon.png
- 114×114
- 2019/07/19 09:49
- 11.7 KB
- imputgenesperturbationeffect.png
- 732×470
- 2019/08/08 13:02
- 15.4 KB
- info.png
- 330×283
- 2019/12/19 20:21
- 12.5 KB
- infoicon.png
- 50×48
- 2019/07/31 08:33
- 1.3 KB
- inputdatavafinform.png
- 996×469
- 2020/02/05 17:09
- 26.1 KB
- inputpredictreport.png
- 830×181
- 2020/02/05 15:48
- 17.2 KB
- interaction_panel_login.png
- 872×750
- 2021/01/05 15:30
- 128.2 KB
- interaction_panel_startbtn.png
- 920×675
- 2021/01/05 15:32
- 94.1 KB
- iputparamreport_6.png
- 1164×176
- 2020/11/30 19:37
- 20.9 KB
- iputparamreport.png
- 985×194
- 2020/01/28 21:11
- 18.5 KB
- k-foldcrossvalidation.png
- 831×501
- 2021/01/29 22:51
- 42.9 KB
- kazam_screencast_00001.mp4
- 2020/02/07 16:37
- 8 MB
- kegg.png
- 900×616
- 2020/01/31 13:24
- 237 KB
- keggsource.png
- 36×29
- 2020/02/05 10:49
- 1013 B
- kirc_demo_ed_class.txt
- 2017/05/24 13:54
- 1.4 KB
- kirc_demo_ed_stages.txt
- 2017/05/24 13:54
- 750 B
- kirc_demo_genes_vals_tumor.txt
- 2017/05/24 13:54
- 762.5 KB
- kirc_demo_genes_vals.txt
- 2017/05/24 13:54
- 1.5 MB
- listagenesko_diabeteschemokine.txt
- 2019/11/16 11:06
- 604 B
- listagenesko_diabetesrap1.txt
- 2019/11/16 11:07
- 763 B
- listagenesko_diabetestnf.txt
- 2019/11/16 11:06
- 130 B
- loadingperturbationeffectstudy.png
- 1676×867
- 2021/01/08 13:35
- 315.2 KB
- login.mp4
- 2020/02/07 16:18
- 30.7 MB
- login1.png
- 1663×749
- 2018/12/23 20:23
- 110.4 KB
- loginhipathia.png
- 1679×488
- 2021/01/08 13:07
- 39.3 KB
- logo.png
- 114×114
- 2019/07/19 09:53
- 11.7 KB
- main.png
- 1688×1021
- 2017/05/24 13:54
- 195.1 KB
- model_stats.png
- 600×446
- 2021/01/31 16:04
- 35.1 KB
- model_stats.txt
- 2021/01/30 15:46
- 618 B
- morethantwoclass.png
- 996×401
- 2021/01/27 11:25
- 27.4 KB
- moveandselect.png
- 60×37
- 2021/01/27 13:48
- 1.1 KB
- mystudiespredict.png
- 607×403
- 2020/02/05 15:40
- 45.7 KB
- nodes_perturbation_effect.png
- 1295×667
- 2021/01/15 14:35
- 169 KB
- onlycexpreset_hinorm.txt
- 2019/11/15 19:35
- 2.3 MB
- onlycexpresetdiabetes.txt
- 2019/11/16 10:47
- 16.7 MB
- paper.pdf
- 2022/03/23 08:54
- 2.8 MB
- parameters.png
- 999×101
- 2021/01/07 16:48
- 10.9 KB
- path_mechanism.png
- 900×604
- 2020/01/31 13:36
- 487.8 KB
- paths_heatmap.png
- 800×800
- 2020/11/30 20:13
- 384.9 KB
- paths_pca.png
- 800×600
- 2020/11/30 20:13
- 69.7 KB
- pathways_in_cancer_hsa05200_.jpg
- 1500×703
- 2021/01/14 13:17
- 137.6 KB
- pathways.png
- 997×361
- 2020/01/28 20:48
- 22 KB
- pathwayslist.png
- 1006×367
- 2019/08/08 17:46
- 29 KB
- pathwaysreport_6.png
- 1596×834
- 2020/11/30 19:51
- 201.2 KB
- pathwaysreport.png
- 1600×816
- 2021/01/28 21:18
- 222 KB
- pathwaysreport1_6.png
- 308×380
- 2020/11/30 19:51
- 28.7 KB
- pathwaysreport1.png
- 1600×654
- 2021/01/28 21:18
- 213.1 KB
- pathwaysreport2_6.png
- 301×352
- 2020/11/30 19:51
- 8 KB
- pathwaysreport2.png
- 1600×654
- 2021/01/28 21:18
- 213.1 KB
- pathwaysreport3_6.png
- 3084×1621
- 2020/11/30 19:52
- 429.6 KB
- pathwaysreport3.png
- 1600×816
- 2021/01/28 21:18
- 246.9 KB
- pathwaysreport4_6.png
- 1306×128
- 2020/11/30 20:31
- 16.3 KB
- pathwaysreport4.png
- 1600×816
- 2021/01/28 21:18
- 246.4 KB
- pca.png
- 665×518
- 2020/02/05 11:42
- 38.9 KB
- persurbationeffect.png
- 1034×895
- 2019/08/07 08:56
- 56.9 KB
- pertnumberofsamples.png
- 994×171
- 2020/02/20 16:39
- 21.2 KB
- perturbation_effect_form.png
- 1684×921
- 2020/01/27 21:14
- 76.7 KB
- perturbationeffectexample1.png
- 1677×916
- 2021/01/08 13:13
- 266.1 KB
- perturbationeffectexamplechangevalue1.png
- 250×129
- 2021/01/08 13:15
- 14 KB
- perturbationeffectform.png
- 1676×812
- 2020/02/05 16:47
- 50.5 KB
- perturbationeffectreport.png
- 1678×930
- 2019/08/08 12:37
- 339.9 KB
- perturbationexample.png
- 496×272
- 2021/01/08 13:05
- 26.3 KB
- prediction_form.png
- 1677×920
- 2021/01/27 11:11
- 77 KB
- prediction_stats.txt
- 2021/01/30 17:30
- 593 B
- predictionmodelreport.png
- 911×493
- 2021/01/29 23:21
- 57.1 KB
- pretty_legend.png
- 769×279
- 2019/08/05 22:19
- 53.8 KB
- queuedpereff.png
- 587×48
- 2020/02/05 17:00
- 5.6 KB
- rap1_signaling_pathway_hsa04015_1_.svg.png
- 3352×1939
- 2020/11/30 21:13
- 903.4 KB
- rap1gap.txt
- 2021/01/13 14:12
- 5 B
- report_legend.png
- 870×80
- 2020/02/04 15:37
- 22.8 KB
- reportofperturbationeffect.png
- 535×922
- 2021/01/11 13:58
- 55.8 KB
- results_circuit.png
- 267×354
- 2021/01/11 13:58
- 9.3 KB
- results_pathway.png
- 301×374
- 2021/01/11 14:01
- 36.3 KB
- run_example.png
- 1015×410
- 2021/01/08 13:11
- 78.9 KB
- run_study.png
- 621×457
- 2020/01/28 20:52
- 53.2 KB
- runanalysis.png
- 185×64
- 2020/01/28 20:50
- 1.2 KB
- runingperteffect.png
- 584×44
- 2020/02/05 17:01
- 6 KB
- runningpredstudy.png
- 584×47
- 2020/02/05 15:39
- 4.8 KB
- runtrainingexmpl.png
- 1180×214
- 2021/01/30 15:31
- 20.9 KB
- samplesperteffectform.png
- 1005×459
- 2020/02/05 16:55
- 45.9 KB
- savedlayoutsuccess.png
- 1676×918
- 2021/01/28 21:21
- 273.6 KB
- savelayout.png
- 25×25
- 2021/01/07 19:16
- 420 B
- search.png
- 108×31
- 2020/02/05 11:00
- 1.4 KB
- searchapoptosis.gif
- 640×380
- 2020/02/06 15:59
- 342.4 KB
- searchapoptosis.mp4
- 2020/02/05 11:11
- 1.4 MB
- searchapoptosis2.mp4
- 2020/02/05 11:15
- 13.5 MB
- searchgene.png
- 238×218
- 2021/01/08 13:22
- 7.5 KB
- searchgif.gif
- 640×360
- 2020/02/07 13:29
- 19.6 MB
- selectbynode.mp4
- 2021/01/07 19:03
- 48.4 MB
- settings_perturbation_effect.png
- 563×632
- 2021/01/15 13:37
- 69.7 KB
- settings0.png
- 718×742
- 2019/08/08 13:08
- 71.4 KB
- species.png
- 997×121
- 2020/01/28 20:39
- 7.6 KB
- split_prediction_pr.png
- 1889×1062
- 2021/01/30 19:07
- 27.3 KB
- split_prediction_probability_boxplot.png
- 1889×1062
- 2021/01/30 19:07
- 27.1 KB
- split_prediction_roc.png
- 1889×1062
- 2021/01/30 19:07
- 24.1 KB
- split_test_pr.png
- 1889×1062
- 2021/01/30 15:57
- 25.1 KB
- split_test_roc.png
- 1889×1062
- 2021/01/30 15:57
- 25.4 KB
- splittestpr.png
- 615×372
- 2020/02/05 16:32
- 27.6 KB
- splittestroc.png
- 646×389
- 2020/02/05 16:32
- 27 KB
- splittrainpr.png
- 643×380
- 2020/02/05 16:31
- 25.7 KB
- splittrainroc.png
- 654×378
- 2020/02/05 16:32
- 26.3 KB
- stopbtn.png
- 574×44
- 2020/02/04 13:55
- 7.4 KB
- studiesperteffect.png
- 604×404
- 2020/02/05 17:02
- 48.3 KB
- studiesvafin.png
- 601×405
- 2020/02/05 17:24
- 45.5 KB
- studyinfo.png
- 999×270
- 2019/08/07 08:45
- 12.6 KB
- studyinfopereffectform.png
- 1001×267
- 2020/02/05 16:56
- 12.9 KB
- studyinfopredform.png
- 994×265
- 2020/02/05 15:33
- 11.1 KB
- studyinfopredreport.png
- 1271×189
- 2021/01/07 20:10
- 23.5 KB
- studyinforeport_6.png
- 1204×180
- 2021/01/07 19:40
- 30.6 KB
- studyinforeport.png
- 932×148
- 2020/01/28 21:08
- 12.4 KB
- studyinfovafin.png
- 1010×326
- 2019/08/08 17:49
- 21.2 KB
- studyinfovafinform.png
- 998×265
- 2020/02/05 17:22
- 12.8 KB
- studystatus.png
- 603×246
- 2019/07/31 08:54
- 27.1 KB
- svm.performance.heatmap.png
- 944×708
- 2020/02/05 12:01
- 38.7 KB
- test_model_stats.txt
- 2021/01/30 15:55
- 615 B
- test_probability_boxplot.png
- 1889×1062
- 2021/01/30 15:57
- 27 KB
- testmodelstat.png
- 647×472
- 2021/01/29 23:11
- 35.7 KB
- testmodelstatistics.png
- 592×428
- 2020/02/05 16:24
- 28.9 KB
- testpresdictionreport.png
- 1667×792
- 2021/01/30 14:16
- 86.2 KB
- testprobdistboxplot.png
- 635×400
- 2021/01/29 23:08
- 24.6 KB
- testreport.png
- 836×855
- 2021/01/07 20:30
- 91.1 KB
- typepanel.png
- 997×103
- 2021/01/29 22:21
- 6 KB
- typetestpanel.png
- 998×432
- 2021/01/29 22:21
- 101.2 KB
- updatebtn.png
- 140×28
- 2019/08/08 17:19
- 1.3 KB
- uploaddata.mp4
- 2020/02/07 16:57
- 23.5 MB
- uploadgenelist.png
- 1083×777
- 2019/08/08 17:43
- 76 KB
- upperbar_notloggedin.png
- 1679×50
- 2019/12/19 20:18
- 14.6 KB
- upperbar_studies.png
- 606×452
- 2020/01/27 21:06
- 63.1 KB
- upperbar.png
- 1678×52
- 2019/12/19 20:19
- 17.1 KB
- upperdemologged.png
- 1677×54
- 2019/12/19 20:20
- 16.5 KB
- vafin_form.png
- 1682×925
- 2020/01/27 21:15
- 91.3 KB
- vafinpthvw.png
- 1690×889
- 2020/02/06 13:12
- 128 KB
- vafinpthvw1.png
- 1652×825
- 2020/02/06 13:19
- 125.5 KB
- vafinpthvw2.png
- 1652×825
- 2020/02/06 13:38
- 124.6 KB
- vafinpthvw3.png
- 1652×825
- 2020/02/06 13:42
- 125.9 KB
- vafinpthvw4.png
- 1652×825
- 2020/02/06 13:50
- 125.8 KB
- vafinpthvw5.png
- 1652×825
- 2020/02/06 14:10
- 125.6 KB
- vafinpthvw5pv_header.png
- 1350×52
- 2021/01/07 18:42
- 8 KB
- vafinreport1circuit.png
- 1664×828
- 2020/02/06 13:46
- 121 KB
- vafintocancelled.png
- 585×49
- 2020/02/05 17:26
- 7 KB
- variantexample1.png
- 1649×686
- 2019/11/15 19:40
- 100 KB
- variantinterbtn.png
- 1678×51
- 2019/11/15 19:46
- 16.9 KB
- visualization.png
- 209×125
- 2021/01/07 19:12
- 7.3 KB
- width.png
- 24×21
- 2020/02/05 11:01
- 285 B
- workflow1_data_5.png
- 1687×916
- 2019/07/19 11:37
- 133 KB
- workflow1_data.png
- 1537×923
- 2018/12/26 13:18
- 139.4 KB
- workflow2_jobs_5.png
- 571×903
- 2019/07/19 11:40
- 48.7 KB
- workflow2_jobs.png
- 553×866
- 2018/12/26 13:44
- 44 KB
- workflow3_jobs_5.png
- 1679×543
- 2019/07/19 11:58
- 116.3 KB
- workflow3_jobs.png
- 1537×923
- 2018/12/26 13:33
- 133.3 KB
- youtube.png
- 1200×845
- 2019/12/20 18:19
- 19.8 KB
![[root]](/doc/doku.php?id=worked_example_differential_example&ns=&tab_files=files&do=media&tab_details=view&image=circuitsig_6.png){kind=link}
File
- View
- History
- Date:
- 2020/11/30 20:14
- Filename:
- circuitsig_6.png
- Format:
- PNG
- Size:
- 55KB
- Width:
- 1323
- Height:
- 431
- References for:
- Nothing was found.
worked_example_differential_example.txt · Last modified: 2021/01/28 21:23 by krian