differential_signaling_exercises
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differential_signaling_exercises [2017/05/24 13:54] 127.0.0.1 external edit |
differential_signaling_exercises [2020/04/03 20:18] (current) |
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| * Experimental design: {{:GSE51835-Exercise_ED.txt|}} | * Experimental design: {{:GSE51835-Exercise_ED.txt|}} | ||
| - | **1.1.-** Run the Differential signaling tool with these files, selecting the option //Color nodes by differential expression//. Take a look to the results. Which pathways are differentially activated? | + | **1.1.-** Run the Differential signaling tool with these files. Take a look to the results. Which pathways are differentially activated? |
| **1.2.-** What is the role of the differentially expressed genes in the pathways? | **1.2.-** What is the role of the differentially expressed genes in the pathways? | ||
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| - | **1.3.-** Run the Differential signaling tool with these files again, selecting the option //Decompose paths//. Which differences can you find between the two methods? | ||
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| * Experimental design: {{:kirc_demo_ED_class.txt|}} | * Experimental design: {{:kirc_demo_ED_class.txt|}} | ||
| - | **3.1.-** Run the Differential signaling tool with these files, selecting also the functional analyses. You can select the option //Color nodes by differentail expression// if desired. Find representative paths and functions of this disease. | + | **3.1.-** Run the Differential signaling tool with these files, selecting also the functional analyses. Find representative paths and functions of this disease. |
| **3.2.-** Look at the results. If you have done Exercises 1 or 2, can you find any difference in the results of this dataset? | **3.2.-** Look at the results. If you have done Exercises 1 or 2, can you find any difference in the results of this dataset? | ||
differential_signaling_exercises.1495634056.txt.gz · Last modified: 2020/04/03 20:17 (external edit)
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