Differences

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--- parameters [2015/12/21 09:45]
mhidalgo
+++ parameters [2020/04/03 20:18] (current)
@@ Line 1: / Line 1: @@
 ===== Parameters panel=====
-Select further parameters necessary to run a job.
+This panel includes further parameters necessary to run a job.
-**Decompose paths**: Check to consider subpathways with a unique input and a unique output in the analysis. When not selected the analysis is performed using subpathways with multiple inputs but a unique output (effector subpathways).
+**Paired**: Check to consider paired data in the analysis. When not selected the analysis is performed using unpaired parameter for the used statistical test.  **Note:** The Experimental design file must be ordered.
+**Unadjusted**: Check to don't use the FDR correction, this will select significant paths depending on the p-value of the test. (when not selected adjusted p-value will be used). [[https://en.wikipedia.org/wiki/False_discovery_rate|More about FDR...]]
-**Color nodes by differential expression**: Check to perform a gene differential expression and color each node depending on the adjusted p-value of the test.
 **Filter subpaths**: Check to obtain the subpathways that best differentiate your phenotype. This option is only available from //Prediction// tool.

CoV-HiPathia