vafin
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vafin [2020/02/06 14:22] krian [Variant interpreter report] |
vafin [2020/04/03 20:18] (current) |
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| {{ ::checkedsearchforcustomtissue.png?nolink |}} | {{ ::checkedsearchforcustomtissue.png?nolink |}} | ||
| **Note**: You can select all options, but you have to take into account that the analysis will take more minutes depending on you custom tissue file and the server availability. | **Note**: You can select all options, but you have to take into account that the analysis will take more minutes depending on you custom tissue file and the server availability. | ||
| + | When you select the custom gene expression file, the number of samples of this matrix will appear under the “File browser” button as shown below. | ||
| + | {{ ::customnumsamples.png?nolink |}} | ||
| ==== Pathways ==== | ==== Pathways ==== | ||
| This panel includes the list of all available pathways in HiPathia. We can select the pathways with which the analysis will be performed.\\ HiPathia retrieves pathway information from [[https://www.kegg.jp/kegg/pathway.html|KEGG database]]. KEGG pathway database is a collection of manually drawn pathway maps representing the knowledge on the molecular interaction, reaction and relation networks. | This panel includes the list of all available pathways in HiPathia. We can select the pathways with which the analysis will be performed.\\ HiPathia retrieves pathway information from [[https://www.kegg.jp/kegg/pathway.html|KEGG database]]. KEGG pathway database is a collection of manually drawn pathway maps representing the knowledge on the molecular interaction, reaction and relation networks. | ||
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| The top part contains the title of selected pathway,by clicking on this button {{::keggsource.png?nolink|}} you can see the original source of this pathway. | The top part contains the title of selected pathway,by clicking on this button {{::keggsource.png?nolink|}} you can see the original source of this pathway. | ||
| Also you can find other button in the right side: | Also you can find other button in the right side: | ||
| - | * {{::search.png?nolink|}}Allow to search specific genes, proteins or functions.{{ ::searchapoptosis2.mp4?nolink&600 |}} | + | * {{::search.png?nolink|}}Allow to search specific genes, proteins or functions. |
| * {{::export.png?nolink|}}Export a SVG image of viewed objects (the whole pathway or just the selected effector circuit) | * {{::export.png?nolink|}}Export a SVG image of viewed objects (the whole pathway or just the selected effector circuit) | ||
| * {{::center.png?nolink|}}Center the selected pathway | * {{::center.png?nolink|}}Center the selected pathway | ||
vafin.1580998921.txt.gz · Last modified: 2020/04/03 20:17 (external edit)
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