Differences

This shows you the differences between two versions of the page.

--- function_based_analysis [2015/12/21 17:15] – created mhidalgo
+++ function_based_analysis [2019/08/05 22:11] (current) – krian
@@ Line 6: / Line 6: @@
   * **Heatmap**: A heatmap is a graphical representation of the values of a matrix. A not-supervised clustering is performed on the data per columns (samples). A good separation between the two colors of the upper bar of the heatmap indicates that the differences between the two groups are big enough to discriminate between them.
   * **PCA**: A Principal Components Analysis is performed in order to see if the matrix contains information enough to separate between the two groups.
-  * **Path significance**: Ordered table of the functions significance. More significant terms are displayed in the upper part of the table. For each functional term, the following information is shown:
+  * **GO terms/Uniprot keywords significance**: Ordered table of the functions significance. More significant terms are displayed in the upper part of the table. For each functional term, the following information is shown:
     * **path/term**: Name of the function.
     * **UP/DOWN**: Up when the function is up-regulated in the disease case, DOWN otherwise.
@@ Line 12: / Line 12: @@
     * **p.value**: P-value of the statistic test.
     * **FDRp.value**: Adjusted p-value of the statistic test using the FDR method.
+    * **Fold Change**
+    * **logFC**