Differences

This shows you the differences between two versions of the page.

--- path_values [2018/12/26 20:05] – krian
+++ path_values [2019/09/01 13:46] (current) – krian
@@ Line 7: / Line 7: @@
   * **PCA**: A Principal Components Analysis is performed in order to see if the matrix contains information enough to separate between the two groups.
   * **Path significance**: Ordered table of circuit significance. More significant circuits are displayed in the upper part of the table. For each circuit, the following information is shown:
-    * **circuit/term**: Code identifying the circuit consisting in the name of the pathway to which it belongs and the effector (last) node of the path.
+    * **circuit/term**: Code identifying the circuit consisting in the name of the pathway to which it belongs and the effector (last) node of the path (//pathway Name : Effector//).
     * **UP/DOWN**: Up when the circuit is up-regulated in the disease case, DOWN otherwise.
     * **statistic**: Statistic of the Wilcoxon test performed between conditions.
     * **p.value**: P-value of the statistic test.
     * **FDRp.value**: Adjusted p-value of the statistic test using the FDR method.
+    * **Fold Change**: is a measure describing how much the ** circuit activity** changes between conditions.[[https://en.wikipedia.org/wiki/Fold_change|reed more about Fold Change]]
+    * **logFC**: The logarithm to base 2 of calculated Fold change.