Differences

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--- species [2015/12/21 09:44] – mhidalgo
+++ species [2021/01/07 16:56] (current) – krian
@@ Line 3: / Line 3: @@
 Here we must choose the species of our experiment.
 You can choose among:
   * Human (Homo sapiens)
   * Mouse (Mus musculus)
-  * Rat (Rattus norvegicus)
+  * Rat (Rattus norvegicus).
+{{ ::species.png?nolink |}}
-When a **VCF file has been selected**, only Human species can be selected. Also, we need to specify some further parameters:
-  * **Reference genome**: Select either reference genome GRCh37 or GRCh38
-  * **Inheritance pattern**: Select the kind of inheritance pattern, either recessive or dominant.
-  * **Compound hetero**: Select if heterozygote compounds must be considered.
-  * **SIFT, PolyPhen, PhastCons**: Select which tools must be used in order to infer the impact of the mutations in the expression profile. At least one of them must be selected.