hiPathia

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===== Experimental design =====
This panel includes further parameters necessary to run a study.
==== Paired ====

Check to consider paired data in the analysis. When not selected the analysis is performed using unpaired parameter for the used statistical test-[[https://stat.ethz.ch/R-manual/R-devel/library/stats/html/wilcox.test.html|Wilcoxon]]-.\\ **Note:** The Experimental design file must be ordered.
==== Unadjusted ====

Check to don't use the FDR correction, this will select significant circuits depending on the p-value of the Wilcoxon test. (when not selected adjusted p-value will be used). [[https://en.wikipedia.org/wiki/False_discovery_rate|More about FDR...]]
{{ ::parameters.png?nolink |}}

==== Filter circuits ====

Check to obtain the circuits that best differentiate your phenotype. This option is only available from //Prediction// tool.
{{ ::filtercircuits.png?nolink |}}