worked_example_differential_example
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worked_example_differential_example [2021/01/14 13:43] – [Differential signaling inputs] krian | worked_example_differential_example [2021/01/28 21:23] (current) – krian | ||
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===== The oestrogen receptor (ER+) positive group Vs negative group (ER-) ===== | ===== The oestrogen receptor (ER+) positive group Vs negative group (ER-) ===== | ||
==== Differential signaling inputs ==== | ==== Differential signaling inputs ==== | ||
+ | **Note:** You can also launch the Differential signaling example by clicking the //Run example// button or the //help// button on the header and then // | ||
+ | |||
**1-** Log into HiPathia. For further information on this step visit [[logging_in|logging in]]. | **1-** Log into HiPathia. For further information on this step visit [[logging_in|logging in]]. | ||
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* Experimental design: | * Experimental design: | ||
- | **3-** Upload the normalized data to HiPathia by clicking //My data// in the data panel. For further information on this step visit [[upload_your_data|Upload your data]]. | + | **3-** Upload the normalized data to HiPathia by clicking //My data// in the data panel, or click the //run example// button. For further information on this step visit [[upload_your_data|Upload your data]]. |
**4-** Click // | **4-** Click // | ||
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This a video tutorial for differential signaling study: {{: | This a video tutorial for differential signaling study: {{: | ||
- | ==== Differential signaling results ==== | + | ==== Differential signaling results |
Once the analysis is finished at HiPathia web, the report/ | Once the analysis is finished at HiPathia web, the report/ | ||
+ | For further information about the differential signaling report please visit [[differential_signaling# | ||
+ | /* | ||
Furthermore, | Furthermore, | ||
{{ :: | {{ :: | ||
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* **Fold Change**: is a measure describing how much the ** circuit activity** changes between conditions.[[https:// | * **Fold Change**: is a measure describing how much the ** circuit activity** changes between conditions.[[https:// | ||
* **logFC**: The logarithm to base 2 of calculated Fold change. | * **logFC**: The logarithm to base 2 of calculated Fold change. | ||
+ | */ | ||
+ | /* | ||
==== Results interpretations ==== | ==== Results interpretations ==== | ||
+ | */ | ||
**Estrogen receptor (ER) pathway (hsa04915): | **Estrogen receptor (ER) pathway (hsa04915): |
worked_example_differential_example.1610631795.txt.gz · Last modified: 2021/01/14 13:43 by krian