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worked_example_differential_example [2021/01/27 14:46] – [Differential signaling results] krianworked_example_differential_example [2021/01/28 21:23] (current) krian
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   * Experimental design:[[http://hipathia.babelomics.org/data/brca_designmatrix_ERposneg.tsv|brca_designmatrix_ERposneg.tsv]]   * Experimental design:[[http://hipathia.babelomics.org/data/brca_designmatrix_ERposneg.tsv|brca_designmatrix_ERposneg.tsv]]
  
-**3-** Upload the normalized data to HiPathia by clicking //My data// in the data panel. For further information on this step visit [[upload_your_data|Upload your data]].+**3-** Upload the normalized data to HiPathia by clicking //My data// in the data panel, or click the //run example// button. For further information on this step visit [[upload_your_data|Upload your data]].
  
 **4-** Click //Differential signaling// button.  **4-** Click //Differential signaling// button. 
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 This a video tutorial for differential signaling study: {{:youtube.png?direct&30|https://www.youtube.com/watch?v=ytyagfQpQPk&feature=youtu.be}}:https://www.youtube.com/watch?v=ytyagfQpQPk&feature=youtu.be This a video tutorial for differential signaling study: {{:youtube.png?direct&30|https://www.youtube.com/watch?v=ytyagfQpQPk&feature=youtu.be}}:https://www.youtube.com/watch?v=ytyagfQpQPk&feature=youtu.be
  
-==== Differential signaling results ====+==== Differential signaling results and interpretations ====
 Once the analysis is finished at HiPathia web, the report/results will be available in “My studies”.\\ The results page of the Differential signaling tool includes different output results. You can download any table or image showed in the report page by clicking the name right before it.\\ You can also download the circuit activity values and function matrices by clicking //Circuit values//, //GO terms values// and //Uniprot keywords values// respectively. Once the analysis is finished at HiPathia web, the report/results will be available in “My studies”.\\ The results page of the Differential signaling tool includes different output results. You can download any table or image showed in the report page by clicking the name right before it.\\ You can also download the circuit activity values and function matrices by clicking //Circuit values//, //GO terms values// and //Uniprot keywords values// respectively.
  
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     * **logFC**: The logarithm to base 2 of calculated Fold change.     * **logFC**: The logarithm to base 2 of calculated Fold change.
 */ */
 +
 +/*
  ==== Results interpretations ====  ==== Results interpretations ====
 +*/
  
 **Estrogen receptor (ER) pathway (hsa04915):** **Estrogen receptor (ER) pathway (hsa04915):**
worked_example_differential_example.1611758783.txt.gz · Last modified: 2021/01/27 14:46 by krian