Differences

This shows you the differences between two versions of the page.

--- design_data [2015/12/18 16:44] – mhidalgo
+++ design_data [2021/01/07 16:56] (current) – [**Two-group comparison**] krian
@@ Line 3: / Line 3: @@
 ===== Design data panel =====
-The design data panel allows you to choose the kind of experiment you want to perform. You can choose between three main experimental designs:
+The design data panel allows you to choose the kind of experiment you want to perform. You can choose between two kinds of experimental design:
-  * **Two group comparison**: The comparison is performed between the two groups described in the experimental design file. The experimental design file must include two columns: the first one with the names of the samples, the second one with the class to which each sample belongs.
+==== Two-group comparison ====
+The comparison is performed between the two groups described in the experimental design file.\\ The experimental design file must include **two columns**: the first one with the names of the samples, the second one with the class to which each sample belongs.
+{{ ::designdatacomp.png?nolink |}}
+If the experimental design file contains more than two classes then you have to select the appropriate class for each condition.\\ **Note:** the condition 2 will be taken as a reference condition.
+{{ ::morethantwoclass.png?nolink |}}
-  * **Correlation with continuous variable**: A correlation is performed between the values of each path along the samples and the continuous variable introduced. The experimental design file must include two columns: the first one with the names of the samples, the second one with the value of the variable for each one of the samples.
+==== Correlation with continuous variable ====
-  * **Mutation effect**: The comparison is performed between the expression matrix without considering the mutations, and the expression matrix resulting from integrating the information about the mutations. No experimental design file is needed.
+A correlation is performed between the values of each effector circuit along the samples and the continuous variable introduced.\\ The experimental design file must include **two columns**: the first one with the names of the samples, the second one with the value of the variable for each one of the samples.
+{{ ::designdatacorr.png?nolink |}}