data_format
Differences
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| Both sides previous revisionPrevious revisionNext revision | Previous revision | ||
| data_format [2020/12/30 20:57] – [Gene list file format] krian | data_format [2024/02/27 13:17] (current) – [Experimental design file format] krian | ||
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| Different types of data are used in Hipathia. Some of this data require a certain structure explained on the following links: | Different types of data are used in Hipathia. Some of this data require a certain structure explained on the following links: | ||
| + | |||
| + | **Note:** The recommended file extensions are ' | ||
| ===== Expression matrix file format ===== | ===== Expression matrix file format ===== | ||
| Line 51: | Line 53: | ||
| Experimental design is Tab-separated values file. This file has two columns, the first one corresponds to the sample name and the second one corresponds to the phenotype. | Experimental design is Tab-separated values file. This file has two columns, the first one corresponds to the sample name and the second one corresponds to the phenotype. | ||
| + | < | ||
| + | sample1 Group_1 | ||
| + | sample2 Group_1 | ||
| + | sample3 Group_2 | ||
| + | </ | ||
| **Note**: In case of **paired data** the Experimental design file must be **ordered**. | **Note**: In case of **paired data** the Experimental design file must be **ordered**. | ||
| Line 80: | Line 86: | ||
| </ | </ | ||
| ====== Character encoding ====== | ====== Character encoding ====== | ||
| - | We recommend using the **UTF-8** character encoding for your content or data. | + | We recommend using the **[[https:// |
data_format.1609361834.txt.gz · Last modified: 2020/12/30 20:57 by krian
