data_format
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data_format [2020/12/30 20:58] – [Character encoding] krian | data_format [2024/02/27 13:17] (current) – [Experimental design file format] krian | ||
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Different types of data are used in Hipathia. Some of this data require a certain structure explained on the following links: | Different types of data are used in Hipathia. Some of this data require a certain structure explained on the following links: | ||
+ | |||
+ | **Note:** The recommended file extensions are ' | ||
===== Expression matrix file format ===== | ===== Expression matrix file format ===== | ||
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Experimental design is Tab-separated values file. This file has two columns, the first one corresponds to the sample name and the second one corresponds to the phenotype. | Experimental design is Tab-separated values file. This file has two columns, the first one corresponds to the sample name and the second one corresponds to the phenotype. | ||
+ | < | ||
+ | sample1 Group_1 | ||
+ | sample2 Group_1 | ||
+ | sample3 Group_2 | ||
+ | </ | ||
**Note**: In case of **paired data** the Experimental design file must be **ordered**. | **Note**: In case of **paired data** the Experimental design file must be **ordered**. | ||
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</ | </ | ||
====== Character encoding ====== | ====== Character encoding ====== | ||
- | We recommend using the [[**UTF-8**| | + | We recommend using the **[[https:// |
data_format.1609361926.txt.gz · Last modified: 2020/12/30 20:58 by krian