hiPathia

User Tools

Site Tools

Trace:
data_format

Differences

This shows you the differences between two versions of the page.

Link to this comparison view

Both sides previous revisionPrevious revision
Next revision		Previous revision
data_format [2021/01/20 18:09] – kriandata_format [2024/02/27 13:17] (current) – [Experimental design file format] krian
Line 3: Line 3:
 Different types of data are used in Hipathia. Some of this data require a certain structure explained on the following links: Different types of data are used in Hipathia. Some of this data require a certain structure explained on the following links:
  
-**Note:** the recommended file extensions are '.txt' or '.tsv'.+**Note:** The recommended file extensions are '.txt' or '.tsv'.
  
 ===== Expression matrix file format ===== ===== Expression matrix file format =====
Line 53: Line 53:
  
 Experimental design is Tab-separated values file. This file has two columns, the first one corresponds to the sample name and the second one corresponds to the phenotype. Experimental design is Tab-separated values file. This file has two columns, the first one corresponds to the sample name and the second one corresponds to the phenotype.
 +<code> 
 +sample1 Group_1 
 +sample2 Group_1 
 +sample3 Group_2 
 +</code>
  
 **Note**: In case of **paired data** the Experimental design file must be **ordered**. **Note**: In case of **paired data** the Experimental design file must be **ordered**.
data_format.1611166166.txt.gz · Last modified: 2021/01/20 18:09 by krian